Implementation Guide for Astacus project - Local Development build (v0.0.1) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

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Resource Profile: AstacusHumanSpecimen - Mappings

Draft as of 2024-05-23

Maturity Level: 1

Mappings for the astacus-human-specimen resource profile.

Mappings for RIM Mapping (http://hl7.org/v3)

AstacusHumanSpecimen
Specimen	Entity. Role, or Act, Role[classCode=SPEC]
meta	n/a, N/A
implicitRules	n/a
language	n/a
text	n/a, N/A, Act.text?
contained	Entity. Role, or Act, N/A
extension	n/a, N/A
modifierExtension	n/a, N/A
identifier	n/a, II - The Identifier class is a little looser than the v3 type II because it allows URIs as well as registered OIDs or GUIDs. Also maps to Role[classCode=IDENT], .id
identifier (bodyStructureIdentifier)	n/a, II - The Identifier class is a little looser than the v3 type II because it allows URIs as well as registered OIDs or GUIDs. Also maps to Role[classCode=IDENT]
id	n/a
extension	n/a
use	Role.code or implied by context
type	Role.code or implied by context
system	II.root or Role.id.root
value	II.extension or II.root if system indicates OID or GUID (Or Role.id.extension or root)
period	Role.effectiveTime or implied by context
assigner	II.assigningAuthorityName but note that this is an improper use by the definition of the field. Also Role.scoper
accessionIdentifier	n/a, II - The Identifier class is a little looser than the v3 type II because it allows URIs as well as registered OIDs or GUIDs. Also maps to Role[classCode=IDENT], .participation[typeCode=SBJ].act[classCode=ACSN, moodCode=EVN].id
status	n/a, status
type	n/a, CD, .code
subject	n/a, The target of a resource reference is a RIM entry point (Act, Role, or Entity), .scoper or .scoper.playsRole
receivedTime	n/a, .participation[typeCode=SBJ].act[code=SPCREC, moodCode=EVN].effectiveTime
parent	n/a, The target of a resource reference is a RIM entry point (Act, Role, or Entity), .scoper (if parent) .player.scopesRole[classCode=SPEC].player (if child)
request	n/a, The target of a resource reference is a RIM entry point (Act, Role, or Entity), outboundRelationship[typeCode=FLFS].target
collection	n/a, .participation[typeCode=SBJ].act[classCode=SPECCOLLECT, moodCode=EVN]
id	n/a
extension	n/a, N/A
modifierExtension	n/a, N/A
collector	n/a, The target of a resource reference is a RIM entry point (Act, Role, or Entity), .participation[typeCode=PFM].role
collected[x]	n/a, .effectiveTime
duration	n/a, PQ, IVL<PQ>, MO, CO, depending on the values, PQ, IVL<PQ> depending on the values
quantity	n/a, PQ, IVL<PQ>, MO, CO, depending on the values, .participation[typeCode=SBJ].role[classCode=SPEC].player.quantity
method	n/a, CD, .methodCode
bodySite	n/a, CD, .targetSiteCode
id	n/a
coding	n/a, CV, union(., ./translation)
text	n/a, ./originalText[mediaType/code="text/plain"]/data
fastingStatus[x]	n/a
processing	n/a, .participation[typeCode=SBJ].act[code=SPCTRT, moodCode=EVN]
id	n/a
extension	n/a, N/A
modifierExtension	n/a, N/A
description	n/a, .text
procedure	n/a, CD, .code
additive	n/a, The target of a resource reference is a RIM entry point (Act, Role, or Entity), .participation[typeCode=CSM].role[classCode=ADTV].code
time[x]	n/a, .effectiveTime
container	n/a, .player.scopingRole[classCode=CONT].scoper
id	n/a
extension	n/a, N/A
modifierExtension	n/a, N/A
identifier	n/a, II - The Identifier class is a little looser than the v3 type II because it allows URIs as well as registered OIDs or GUIDs. Also maps to Role[classCode=IDENT], .id
description	n/a, .desc
type	n/a, CD, .code
capacity	n/a, PQ, IVL<PQ>, MO, CO, depending on the values, .quantity
specimenQuantity	n/a, PQ, IVL<PQ>, MO, CO, depending on the values, .playedRole[classCode=CONT].quantity
additive[x]	n/a, .scopesRole[classCode=ADTV].player
condition	n/a, CD
note	n/a, Act, .inboundRelationship[typeCode=SUBJ].source[classCode=OBS, moodCode=EVN, code="annotation"].value

Mappings for FiveWs Pattern Mapping (http://hl7.org/fhir/fivews)

AstacusHumanSpecimen
Specimen
identifier	FiveWs.identifier
accessionIdentifier	FiveWs.identifier
status	FiveWs.status
type	FiveWs.what[x]
subject	FiveWs.subject[x], FiveWs.subject
receivedTime	FiveWs.done[x]
request	FiveWs.why[x]
collection
collector	FiveWs.actor
collected[x]	FiveWs.init
duration	FiveWs.init

Mappings for HL7 v2 Mapping (http://hl7.org/v2)

AstacusHumanSpecimen
Specimen
identifier	CX / EI (occasionally, more often EI maps to a resource id or a URL), SPM-2
identifier (bodyStructureIdentifier)	CX / EI (occasionally, more often EI maps to a resource id or a URL)
use	N/A
type	CX.5
system	CX.4 / EI-2-4
value	CX.1 / EI.1
period	CX.7 + CX.8
assigner	CX.4 / (CX.4,CX.9,CX.10)
accessionIdentifier	CX / EI (occasionally, more often EI maps to a resource id or a URL), SPM-30 (v2.7+)
status	SPM-20
type	CE/CNE/CWE, SPM-4 and possibly SPM-5
receivedTime	SPM-18
request	ORC? OBR-2/3?
collection	SPM-14
collector	PRT
collected[x]	SPM-17
duration	SN (see also Range) or CQ
quantity	SN (see also Range) or CQ, SPM-12
method	CE/CNE/CWE, SPM-7
bodySite	CE/CNE/CWE, SPM-8 and SPM-9
coding	CE/CNE/CWE subset one of the sets of component 1-3 or 4-6, C*E.1-8, C*E.10-22
text	C*E.9. But note many systems use C*E.2 for this
fastingStatus[x]	OBR-
processing
procedure	CE/CNE/CWE
additive	SPM-6
container
identifier	CX / EI (occasionally, more often EI maps to a resource id or a URL), SAC-3
type	CE/CNE/CWE, SPM-27
capacity	SN (see also Range) or CQ, one of: SAC 16, SAC17 and SAC 20, or SAC 21 and SAC 20
specimenQuantity	SN (see also Range) or CQ, SAC-23 (value) SAC-24 (units
additive[x]	SAC-27
condition	CE/CNE/CWE, SPM-24
note	N/A, OBX